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LOC_001K3WY.1
Download
Download FASTA
Download metadata TSV
Pakistan/LOC_001K3WY.1/2024-11-12
M. Umair,
R. Hakim,
Z. Jamal &
M. Salman
National Institute of Health, Department of Virology
Sample details
Collection date
2024-11-12
Earliest release date
2026-10-12
Sampling location
Pakistan (LakkiMarwat-KPK)
Isolate name
CCHF/NIHPAK-77/2024
Data use terms
Data use terms
OPEN
(history)
Data use terms URL
https://#TODO-MVP/open
INSDC
NCBI release date
2026-10-12
INSDC accession L segment
PZ719795.1
INSDC accession M segment
PZ719794.1
INSDC accession S segment
PZ719793.1
Host
Host
human (Homo sapiens)
Submission details
Submission ID
PZ719795.1.L/PZ719794.1.M/PZ719793.1.S
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2026-10-13 03:33:02 UTC
Date released
2026-10-13 03:33:58 UTC
Clade & Lineage
Closest reference L segment
singleReference (variant)
Closest reference M segment
M (MH396653.1)
Closest reference S segment
S1 (OL774851.1) (variant)
Files
Annotations
LOC_001K3WY.1.embl
Alignment and QC
Total SNPs L segment
1647
Total inserted nucs L segment
27
Length L segment
12120 (99.9%)
Total SNPs M segment
38
Total inserted nucs M segment
1
Total unknown nucs M segment
81
Length M segment
5329 (96.2%)
Total SNPs S segment
216
Length S segment
1626 (90%)
Nucleotide mutations
Mutations called relative to the
NC_005301.3
,
MH396653.1
&
OL774851.1
references
Substitutions
L segment
G
23
T
A
35
G
A
36
T
G
43
T
T
49
C
C
63
G
C
64
T
T
65
C
T
66
C
T
68
C
G
69
A
G
71
C
C
85
T
G
88
A
G
93
A
A
109
G
C
117
A
A
124
G
Show more
M segment
A
172
G
A
236
G
C
245
A
A
251
G
C
288
T
T
326
C
A
372
G
G
529
A
C
576
T
C
603
T
G
634
A
C
645
T
C
685
T
C
720
T
C
817
T
G
836
A
A
888
G
T
1000
C
Show more
S segment
T
16
A
C
31
G
T
63
C
A
65
G
A
84
G
A
93
G
A
98
T
A
102
G
C
150
T
G
153
A
T
156
C
T
166
C
A
173
G
G
174
A
G
180
A
A
186
G
C
192
T
C
201
T
Show more
Deletions
N/A
Insertions
L segment
ins_58:T, ins_11917:CA, ins_12053:CTAC, ins_12086:CTACTATTCCAC, ins_12108:TTTATTAT
M segment
ins_5232:N
Amino acid substitutions
Substitutions called relative to the
NC_005301.3
,
MH396653.1
&
OL774851.1
references
Substitutions
GPC
GPC:
T
50
A
GPC:
P
53
T
GPC:
T
55
A
GPC:
A
67
V
GPC:
S
80
P
GPC:
E
95
G
GPC:
P
163
L
GPC:
A
172
V
GPC:
P
186
L
GPC:
S
211
L
GPC:
D
250
N
GPC:
K
267
R
GPC:
T
348
A
GPC:
I
432
V
GPC:
V
996
A
GPC:
N
1586
D
NP
NP:
N
9
S
NP:
Y
20
F
NP:
K
45
R
NP:
V
83
A
NP:
D
116
E
NP:
A
124
S
NP:
Q
179
L
NP:
D
199
E
NP:
R
270
K
NP:
A
307
V
NP:
E
322
D
NP:
Q
405
L
RdRp
RdRp:
S
6
N
RdRp:
A
14
D
RdRp:
S
19
T
RdRp:
Y
60
N
RdRp:
R
63
H
RdRp:
S
67
V
RdRp:
R
80
K
RdRp:
V
82
I
RdRp:
I
114
V
RdRp:
V
142
M
RdRp:
T
163
A
RdRp:
A
168
T
RdRp:
M
172
V
RdRp:
R
174
K
RdRp:
A
202
M
RdRp:
S
205
P
RdRp:
N
206
Y
RdRp:
I
223
A
Show more
Deletions
N/A
Insertions
N/A
Nucleotide sequences
Reference-aligned nucleotide sequences
Reference-aligned amino acid sequences
L segment
M segment
S segment
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