This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_001K3XW.1

USA/LOC_001K3XW.1/2026-08-26
P. Dykema, N. Hanson, Q. Yang, D. Lucas, S. Jr. Grimmet, J. Johnson & K. Waterman

Washington State Department of Health Public Health Labs, Division of Disease Control and Statistics

Sample details

Collection date
2026-08-26
Earliest release date
2026-10-12
Sampling location
USA (Washington,Jefferson)
Isolate name
WNV/USA/WAPHL-984774/2026

Data use terms

Data use terms
OPEN
Data use terms URL

INSDC

NCBI release date
2026-10-12
NCBI update date
2026-10-12
INSDC accession
BioProject accession
BioSample accession

Host

Host

Submission details

Submission ID
QB137855.1
Submitting group
Date submitted
2026-10-13 05:00:41 UTC
Date released
2026-10-13 05:00:45 UTC

Lineage

Lineage
1A

Files

Annotations

Alignment and QC

Total SNPs
115
Total deleted nucs
1
Length
10786 (97.8%)
Amino Acid Mutations from founder clade
  • 2K:L15M
  • NS2A:R188K
  • NS2B:A103V
  • NS3:K14R
  • NS3:T249P
  • NS3:I356T
  • NS4A:V85A
  • NS4B:I240M
  • NS5:L172M
  • NS5:K177R
  • NS5:S291G
  • NS5:R422K
  • NS5:G805R
  • env:Y61C
  • env:K93R
  • env:T126I
  • env:I159A
  • prM:F155L
Variant
True

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions
  • C340T
  • C435T
  • G489A
  • A630G
  • A654G
  • C660T
  • T928C
  • A1148G
  • C1353T
  • T1442C
  • C1465T
  • G1482A
  • G1662A
  • C1750T
  • T1830C
  • G1854A
  • G1947A
  • T2052C
Deletions
10492
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the NC_009942.1 reference

Substitutions

NS2A

  • NS2A:R188K

NS3

  • NS3:K14R

NS4B

  • NS4B:I240M

NS5

  • NS5:L172M
  • NS5:S291G
  • NS5:R422K
  • NS5:G805R

env

  • env:Y61C
  • env:V159A
  • env:L167F

prM

  • prM:F155L
Deletions
N/A
Insertions
N/A

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